The following links point to tools that are relevant to 3DNA.

• Curves+ — an updated version of the well-known Curves program, and conforms to the standard base reference frame.
• SwS — a Solvation web Service for Nucleic Acids where 3DNA plays a role.
• 3D-DART — 3DNA-Driven DNA Analysis and Rebuilding Tool. Another web-interface to commonly used 3DNA functionality.
• Raster3D — a set of tools for generating high quality raster images of proteins or other molecules.
• MolScript — a program for displaying molecular 3D structures, such as proteins, in both schematic and detailed representations.
• Jmol — an open-source Java viewer for chemical structures in 3D with features for chemicals, crystals, materials and biomolecules.
• PyMOL — a user-sponsored molecular visualization system on an open-source foundation.
• RasMol — a program for molecular graphics visualisation originally developed by Roger Sayle. Note that v2.7.x has problem in displaying base block files in Alchemy format.
• ImageMagick — a software suite to create, edit, compose, or convert bitmap images.
• NDB — Nucleic acids database.